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Direct submissions are made to GenBank using BankIt, which is a Web-based form, or the stand-alone submission program, Sequin. Upon receipt of a sequence submission, the GenBank staff assigns an Accession number to the sequence and performs quality assurance checks. The submissions are then released to the public database, where the entries are retrievable by Entrez or downloadable by FTP. Bulk submissions of Expressed Sequence Tag (EST), Sequence Tagged Site (STS), Genome Survey Sequence (GSS), and High-Throughput Genome Sequence (HTGS) data are most often submitted by large-scale sequencing centers. The GenBank direct submissions group also processes complete microbial genome sequences.
Additional recommended knowledge
Walter Goad of the Theoretical Biology and Biophysics Group at Los Alamos National Laboratory and others established the Los Alamos Sequence Database in 1979, which culminated in 1982 with the creation of the public GenBank funded by the National Institutes of Health, the National Science Foundation, the Department of Energy and the Department of Defense. LANL collaborated on GenBank with the firm Bolt, Beranek, and Newman, and by the end of 1983 more than 2,000 sequences were stored in it.
In the mid 1980s, the Intelligenetics bioinformatics company at Stanford University managed the GenBank project in collaboration with LANL. As one of the earliest bioinformatics community projects on the Internet, the GenBank project started BIOSCI/Bionet news groups for promoting open access communications among bioscientists. During 1989 to 1992, the GenBank project transitioned to the newly created National Center for Biotechnology Information.
Growth of GenBank
The GenBank release notes for release 162.0 (October, 2007) state that "from 1982 to the present, the number of bases in GenBank has doubled approximately every 18 months." The following plot clearly shows the exponential growth. (On a semi-log scale such as this, a straight line represents an exponential change.)
The GenBank database includes additional data sets which are constructed mechanically from the main sequence data collection, and therefore are excluded from this count.
|This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "GenBank". A list of authors is available in Wikipedia.|