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UniProt is the universal protein database, a central repository of protein data created by combining Swiss-Prot, TrEMBL and PIR. This makes it the world's most comprehensive resource on protein information.
Additional recommended knowledge
The UniProt Consortium
The UniProt Consortium comprises the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource (PIR). EBI, located at the Wellcome Trust Genome Campus in Hinxton, UK, hosts a large resource of bioinformatics databases and services. SIB, located in Geneva, Switzerland, maintains the ExPASy (Expert Protein Analysis System) servers that are a central resource for proteomics tools and databases. PIR, hosted by the National Biomedical Research Foundation (NBRF) at the Georgetown University Medical Center in Washington, DC, USA, is heir to the oldest protein sequence database, Margaret Dayhoff's Atlas of Protein Sequence and Structure. In 2002, EBI, SIB, and PIR joined forces as the UniProt Consortium.
The Roots of UniProt Databases
Each consortium member is heavily involved in protein database maintenance and annotation. Until recently, EBI and SIB together produced Swiss-Prot and TrEMBL, while PIR produced the Protein Sequence Database (PIR-PSD). These databases coexisted with differing protein sequence coverage and annotation priorities. Swiss-Prot is recognized as the gold standard of protein annotation, with extensive cross-references, literature citations, and computational analyses provided by expert curators. Recognizing that sequence data were being generated at a pace exceeding Swiss-Prot's ability to keep up, TrEMBL (Translated EMBL Nucleotide Sequence Data Library) was created to provide automated annotations for those proteins not in Swiss-Prot. Meanwhile, PIR maintained the PIR-PSD and related databases, including iProClass, a database of protein sequences and curated families. The consortium members — all dedicated to the same goal of providing expansive and meaningful protein annotation, and all with solid foundations stemming from decades of activity — decided to pool their overlapping (and, importantly, their complementary) resources, efforts, and expertise. The UniProt databases build upon these solid foundations.
Organization of UniProt Databases
The UniProt databases consist of three database layers:
Funding for UniProt
UniProt is mainly supported by the National Institutes of Health (NIH) grant 1 U01 HG02712-01. Minor support for the EBI's involvement in UniProt comes from the two European Union contracts BioBabel (QLRT-2000-00981) and TEMBLOR (QLRI-2001-00015) and from the NIH grant 1R01HGO2273-01.
|This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "UniProt". A list of authors is available in Wikipedia.|