Haploview

Haploview^[1] is a commonly used bioinformatics software tool which is designed to analyze and visualize patterns of linkage disequilibrium in genetic data. Haploview also provides functionality for performing association studies, choosing tagSNPs^[2] and estimating haplotype frequencies. Haploview is developed and maintained by Dr. Mark Daly's lab at the MIT/Harvard Broad Institute.

References

1. ^ Barrett J.C., Fry B., Maller J., Daly M.J. (2005). "Haploview: analysis and visualization of LD and haplotype maps". Bioinformatics 21: 263-265.
2. ^ de Bakker P. I., Yelensky R., Pe'er I., Gabriel S. B., Daly M. J., Altshuler D. (2005). "Efficiency and power in genetic association studies.". Nature Genetics 37: 1217-1223.