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The population genetics of maize dwarf mosaic virus (MDMV) in Spain was assessed by analysis of the P1-HC region. Restriction fragment length polymorphism analysis of 363 isolates revealed that the MDMV population consisted of 69 haplotypes. Sequence analysis of 112 isolates confirmed a high degree of nucleotide sequence diversity (0.143), which was higher for P1 than for the HC. Twelve sequences showed a single different recombination event. Selection pressure analysis revealed that the P1-HC region was under strong negative selection. The MDMV population was spatially structured but not structured temporally or by host. Phylogenetic analysis split the sequences into five major groups.
| Authors: | M. A. Achon, A. Larrañaga, N. Alonso-Dueñas | |
| Journal: | Archives of Virology | |
| Year: | 2012 | |
| DOI: | 10.1007/s00705-012-1427-3 | |
| Publication date: | 01-08-2012 |
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