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Molecular Evidence for Convergence and Parallelism in Evolution of Complex Brains of Cephalopod Molluscs: Insights from Visual Systems

01.12.2015 | M. A. Yoshida; A. Ogura; K. Ikeo; S. Shigeno; T. Moritaki; G. C. Winters; A. B. Kohn; L. L. Moroz, Integrative and Comparative Biology, 2015

Coleoid cephalopods show remarkable evolutionary convergence with vertebrates in their neural organization, including (1) eyes and visual system with optic lobes, (2) specialized parts of the brain controlling learning and memory, such as vertical lobes, and (3) unique vasculature supporting such ...


Cholesterol loading in vivo and in vitro alters extracellular matrix proteins production in smooth muscle cells

21.11.2015 | Rogelio Palomino‐Morales, Sonia Perales, Carolina Torres, Ana Linares, Maria Jose Alejandre, European Journal of Lipid Science and Technology, 2015

Abstract This study supports the SMC dedifferentiation in vitro model and increases our fundamental knowledge of plaque formation and remodeling. With this purpose, we isolated smooth muscle cells form aortic arch of chicks either fed under control or high cholesterol diets. From the former ...


The lncRNA RZE1 Controls Cryptococcal Morphological Transition

20.11.2015 | Nadia Chacko et al., PLoS Genetics, 2015

by Nadia Chacko, Youbao Zhao, Ence Yang, Linqi Wang, James J. Cai, Xiaorong Lin In the fungal pathogen Cryptococcus neoformans, the switch from yeast to hypha is an important morphological process preceding the meiotic events during sexual development. Morphotype is also known to be associated ...


Design, Synthesis, and Antiviral Activity of Novel Ribonucleosides of 1,2,3‐Triazolylbenzyl‐aminophosphonates

17.11.2015 | Abdelaaziz Ouahrouch, Moha Taourirte, Dominique Schols, Robert Snoeck, Graciela Andrei, Joachim W. Engels, Hassan B. ..., Archiv der Pharmazie, 2015

A novel series of ribonucleosides of 1,2,3‐triazolylbenzyl‐aminophosphonates was synthesized through the Kabachnik–Fields reaction using I2 as catalyst followed by copper‐catalyzed cycloaddition of the azide–alkyne reaction (CuAAC). All structures of the newly prepared compounds were ...


The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent

16.11.2015 | Ralf Hauenschild; Lyudmil Tserovski; Katharina Schmid; Kathrin Thüring; Marie-Luise Winz; Sunny Sharma; Karl-Dieter ..., Nucleic Acids Research, 2015

The combination of Reverse Transcription (RT) and high-throughput sequencing has emerged as a powerful combination to detect modified nucleotides in RNA via analysis of either abortive RT-products or of the incorporation of mismatched dNTPs into cDNA. Here we simultaneously analyze both ...


Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

15.11.2015 | Mumtahena Rahman; Laurie K. Jackson; W. Evan Johnson; Dean Y. Li; Andrea H. Bild; Stephen R. Piccolo, Bioinformatics, 2015

Motivation: The Cancer Genome Atlas (TCGA) RNA-Sequencing data are used widely for research. TCGA provides ‘Level 3’ data, which have been processed using a pipeline specific to that resource. However, we have found using experimentally derived data that this pipeline produces gene-expression ...


Dengue Virus Non-structural Protein 1 Modulates Infectious Particle Production via Interaction with the Structural Proteins

12.11.2015 | Pietro Scaturro et al., PLoS Pathogens, 2015

by Pietro Scaturro, Mirko Cortese, Laurent Chatel-Chaix, Wolfgang Fischl, Ralf Bartenschlager Non-structural protein 1 (NS1) is one of the most enigmatic proteins of the Dengue virus (DENV), playing distinct functions in immune evasion, pathogenesis and viral replication. The recently reported ...


Interferon-γ Inhibits Ebola Virus Infection

12.11.2015 | Bethany A. Rhein et al., PLoS Pathogens, 2015

by Bethany A. Rhein, Linda S. Powers, Kai Rogers, Manu Anantpadma, Brajesh K. Singh, Yasuteru Sakurai, Thomas Bair, Catherine Miller-Hunt, Patrick Sinn, Robert A. Davey, Martha M. Monick, Wendy Maury Ebola virus outbreaks, such as the 2014 Makona epidemic in West Africa, are episodic and ...


Stable tri-snRNP integration is accompanied by a major structural rearrangement of the spliceosome that is dependent on Prp8 interaction with the 5' splice site [ARTICLE]

01.11.2015 | Carsten Boesler; Norbert Rigo; Dmitry E. Agafonov; Berthold Kastner; Henning Urlaub; Cindy L. Will; Reinhard Lührmann, RNA, 2015

Exon definition is the predominant initial spliceosome assembly pathway in higher eukaryotes, but it remains much less well-characterized compared to the intron-defined assembly pathway. Addition in trans of an excess of 5'ss containing RNA to a splicing reaction converts a 37S exon-defined ...


DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts [RESEARCH]

01.11.2015 | Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., Adamska, D., Kosinska, J., ..., Genome Research, 2015

Human DIS3, the nuclear catalytic subunit of the exosome complex, contains exonucleolytic and endonucleolytic active domains. To identify DIS3 targets genome-wide, we combined comprehensive transcriptomic analyses of engineered HEK293 cells that expressed mutant DIS3, with Photoactivatable ...


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